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Computational Biology and Informatics Lab (CBIL)

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AnnotCompute was a tool to identify similar functional genomics experiments (mainly microarray experiments) based on standardized annotations containing the MGED Ontology (MO) terms. Users could search for experiments using keywords or based on annotations similarity to an experiment they provided in MAGE-TAB format. The searches were carried out against a collection of 34391 experiments downloaded from ArrayExpress in January 2013.


Zheng J, Stoyanovich J, Manduchi E, Liu J, Stoeckert CJ Jr. AnnotCompute: annotation-based exploration and meta-analysis of genomics experiments. Database (Oxford). 2011 Dec 21;2011:bar045. PMID: 22190598

AnnotCompute was supported by NHGRI grant R21 HG004521